Posts tagged computational biology
Amber Biology to become an underwriter on NPR
Amber Biology to become an underwriter on NPR

Amber Biology will be helping NPR bring you the news and other current affairs programs on our local station WBUR which serves the Boston area.

Read More
Amber Biology, BusinessGordon Webster#npr #wbur #radio #underwriting #currentaffairs #mediacoverage #media #press #bioinformatics #computationalbiology #biology #lifesciences, npr, wbur, radio, underwriting, current affairs, media coverage, media, press, bioinformatics, computational biology, biology, lifesciences
The limitations of deterministic modeling in biology
The limitations of deterministic modeling in biology

There are excellent reasons for biologists to consider looking beyond differential equations as their tool of choice for modeling and simulating biological systems.

Read More
Modeling & Simulation, Computational Biology, Systems Biology, Mathematical BiologyGordon Webstermodeling, simulation, calculus, differential equations, dynamic modeling, deterministic modeling, stochastic modeling, agent-based modeling, computational biology, systems biology, cell signaling pathways, cell biology, cell signaling
If you really want to understand how a biological pathway works, build one
If you really want to understand how a biological pathway works, build one

Amber Biology was recently commissioned by a biotechnology company, to build a dynamic, agent-based model of a biological pathway.

Read More
Bioinformatics, Biomarkers, Computational Biology, Modeling & Simulation, Systems Biology, Cell SignalingAlex Lancastercomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, cell signaling, cell signaling pathway, cell signaling network, cell biology, molecular biology
A Collaborative Cloud-Based Biological Modeling Platform
A Collaborative Cloud-Based Biological Modeling Platform

A brief video demo of a collaborative, cloud-based biological modeling platform running in a web browser.

Read More
Computational Biology, Mathematical Biology, Modeling & Simulation, Systems BiologyGordon Webstercomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, cell signaling, cell signaling pathway, cell signaling network, cell biology, molecular biology
Amber Biology presenting on biological pattern formation at Jan 23 Boston Python Meetup
Amber Biology presenting on biological pattern formation at Jan 23 Boston Python Meetup

Amber Biology is presenting at the Boston Python Meetup, on the modeling of biological pattern formation ...  

Read More
Amber Biology, Bioinformatics, Mathematical Biology, Modeling & Simulation, Python, Software Development, Systems Biology, TrainingAlex Lancastercomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations
A spring surprise: computational analysis unearths potential prions in plants
A spring surprise: computational analysis unearths potential prions in plants

A new paper involving Amber Biology consultants, illustrates the power of bioinformatics to find intriguing features in proteomes …

Read More
Computational Biology, Mathematical Biology, Modeling & Simulation, Systems BiologyAlex Lancastercomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, prions
The Central Role Of User Experience Design In Scientific Modeling
The Central Role Of User Experience Design In Scientific Modeling

Data is not knowledge. Data can reveal relationships between events –

Read More
Computational Biology, Mathematical Biology, Modeling & Simulation, Software Development, Systems Biology, BioinformaticsGordon Webstercomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, software, software development, programming, coding, python, computation, computer science, programming language, ux, user experience, user experience design, ux design
All Big Data is equal, but some Big Data may be more equal than others
All Big Data is equal, but some Big Data may be more equal than others

It’s often widely assumed that decisions made by algorithms are more “neutral” and “fair” than those made by people.  

Read More
Bioinformatics, Computational Biology, Mathematical Biology, Statistical AnalysisAlex Lancastercomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, big data, data science, data analysis