Posts tagged bioinformatics
Biological Pathway Modeling
Biological Pathway Modeling

When one of our clients really wants to understand how a particular biological pathway works, we can build it for them …

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Project, Modeling & Simulation, BiomarkersGordon Webstercomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, complex adaptive systems, cell signaling, cell signaling pathway, cell signaling network, cell biology, molecular biology, biomarkers
Modeling A Drug's Mechanism of Action
Modeling A Drug's Mechanism of Action

A collaborative, cloud-based software platform being developed for modeling complex cell signaling pathways. This platform implemented a stochastic modeling approach underpinned by a rigorous semantic formalism that made possible a set of powerful static analyses of the modeled systems.

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Project, Algorithms, Modeling & Simulation, Software DevelopmentJen Deaderickcomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, complex adaptive systems, drug discovery, drug mechanism, pharmacology, drug development, user experience, ux, user experience design, ux design
Development Of An Agent-Based Toolkit For Modeling Complex Biological Systems
Development Of An Agent-Based Toolkit For Modeling Complex Biological Systems

Software development of Swarm, a pioneering open-source agent-based modeling toolkit from the Santa Fe Institute, and consulting with scientists using this toolkit to model complex biological systems such as transcription factor networks…

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Project, Algorithms, Modeling & Simulation, Software Development, PythonJen Deaderickcomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, complex adaptive systems, agent-based modeling
Cloud Computing Platform For Simulating Complex Cell-Signaling Networks
Cloud Computing Platform For Simulating Complex Cell-Signaling Networks

A commercial software-as-a-service (Saas) platform built on Amazon Web Services infrastructure, to allow biologists to collaboratively model and stimulate cell-signaling networks…

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Project, Modeling & Simulation, Software Development, Algorithms, Cloud ComputingJen Deaderickcomputational biology, systems biology, bioinformatics, modeling, simulation, stochastic modeling, dynamic modeling, deterministic modeling, calculus, differential equations, complex adaptive systems, cell signaling, cell signaling pathway, cell signaling network, cell biology, molecular biology, cloud computing