Biological Pathway Modeling

When one of our clients really wants to understand how a particular biological pathway works, we can build it for them …

Machine Learning Algorithms

A machine learning algorithm was developed that could reconstruct ab initio, the low resolution structure of a protein from its x-ray diffraction intensities alone.

Data Mining To Optimize A Biological Manufacturing Process

Algorithms were implemented in Python to correlate biomolecule manufacturing outcomes with process parameters, in order to improve the consistency and predictability of the manufacturing process…

Modeling A Drug's Mechanism of Action

A collaborative, cloud-based software platform being developed for modeling complex cell signaling pathways. This platform implemented a stochastic modeling approach underpinned by a rigorous semantic formalism that made possible a set of powerful static analyses of the modeled systems.

Development Of An Agent-Based Toolkit For Modeling Complex Biological Systems

Software development of Swarm, a pioneering open-source agent-based modeling toolkit from the Santa Fe Institute, and consulting with scientists using this toolkit to model complex biological systems such as transcription factor networks…

Cloud Computing Platform For Simulating Complex Cell-Signaling Networks

A commercial software-as-a-service (Saas) platform built on Amazon Web Services infrastructure, to allow biologists to collaboratively model and stimulate cell-signaling networks…